Installation¶
Using Conda¶
Install Conda:
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
As per the Bioconda guidelines, add the following conda channels:
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict
Then install SortMeRNA:
conda search sortmerna
Loading channels: done
# Name Version Build Channel
sortmerna 2.0 0 bioconda
...
sortmerna 4.3.4 0 bioconda
...
sortmerna 4.3.6 0 bioconda
# create a new environment and install SortMeRNA in it
conda create --name sortmerna_env
conda activate sortmerna_env
conda install sortmerna
which sortmerna
/home/biocodz/miniconda3/envs/sortmerna_env/bin/sortmerna
# test the installation
sortmerna --version
SortMeRNA version 4.3.6
Build Date: Aug 16 2022
sortmerna_build_git_sha:@db8c1983765f61986b46ee686734749eda235dcc@
sortmerna_build_git_date:@2022/08/16 11:42:59@
# view help
sortmerna -h